Publications سیده اکرم شیردل

Publications in Journals

International ISI	19. Akram shirdel and khosrow khalifeh Chapter 25: Chondroitinase ABC I as a novel candidate for reducing damage in spinal cord injury. (Book Tilte: Diagnosis and Treatment of Spinal Cord Injury) Academic Press (Elsevier) (2022) PP. 325-335 DOI: 10.1016/B978-0-12-822498-4.00025-7.
International ISI	18. Akram Shirdel, Khosrow Khalifeh Chapter 12: Spectroscopic methods to study protein folding kinetics: Methodology, data analysis, and interpretation of the results. (Book title: Advanced Spectroscopic Methods to Study Biomolecular Structure and Dynamics) Academic Press (Elsevier) (2022) PP. 357-371 DOI: 10.1016/B978-0-323-99127-8.00008-8.
International ISI	17. Yasaman Ahmadi, Vahab Jafarian, Akram Shirdel* Site-specific mutagenesis on Mnemiopsin 2: Calcium coordination and substrate binding properties of new variants Luminescence: The Journal of Biological and Chemical Luminescence Accepted 2024.
International ISI	16. Khadijeh Moradi, Zahra Bayani, Vahab Jafarian, Akram Shirdel* Enzyme Kinetics Features of the Representative Engineered Recombinants of Chondroitinase ABC I The Protein Journal Vol. 42 (2023) PP. 55-63 DOI: 10.1007/s10930-023-10093-w.
International ISI	15. Mahsa Pourahmadi, Akram Shirdel, Nazanin Jamshidi , Vahab Jafarian, Khosrow Khalifeh Comparing similar versions of a connecting helix on the structure of Chondroitinase ABC I Enzyme and Microbial Technology Vol. 160 (2022) PP. 1-7 DOI: 10.1016/j.enzmictec.2022.
International ISI	14. Ashraf Asadi Sofilar, Akram Shirdel, Vahab Jafarian, Khosrow Khalifeh An in silico analysis on the photoproteins Mnemiopsin 1 and Mnemiopsin 2 to explain the experimental results Luminescence: The Journal of Biological and Chemical Luminescence Vol. 38 (2023) PP. 1946-1954 DOI: 10.1002/bio.4584.
International ISI	13. Mahsa Hematyar, Vahab Jafarian, Akram Shirdel* Longer characteristic wavelength in a novel engineered photoprotein Mnemiopsin 2 Photochemical & Photobiological Sciences Vol. 21 (2022) PP. 1031-1040 DOI: 10.1007/s43630-022-00191-6.
International ISI	12. Nazanin Jamshidi, Akram Shirdel, Mahsa Pourahmadi, Vahab Jafarian, KhosrowKhalifeh Bioinformatics and experimental studies on the structural roles of a surface-exposed α-helix at the C-terminal domain of Chondroitinase ABC I International Journal of Biological Macromolecules Vol. 163 (2020) PP. 1572-1578 DOI: 10.1016/j.ijbiomac.2020.07.165.
International ISI	11. Hamed Mohammadyari, S. Akram Shirdel, Vahab Jafarian, Khosrow Khalifeh Designing and construction of novel variants of Chondroitinase ABC I to reduce aggregation rate Archives of Biochemistry and Biophysics Vol. 668 (2019) PP. 46-53 DOI: 10.1016/j.abb.2019.05.013.
International ISI	10. Seyedeh Akram Shirdel, Khosrow Khalifeh Thermodynamics of protein folding: methodology, data analysis and interpretation of data European Biophysics Journal Vol. 48 (2019) PP. 305-315 DOI: 10.1007/s00249-019-01362-7.
International ISI	9. Ziba Mirzaee, Vahab Jafarian, Seyedeh Akram Shirdel, Khosrow Khalifeh Structural and functional consequences of replacement of His403 with Arg near the catalytic site of Anoxybacillus flavithermus cyclomaltodextrinase Enzyme and Microbial Technology Vol. 131 (2019) DOI: 10.1016/j.enzmictec.2019.109421.
International ISI	8. Roghayeh Mohammadi Ghanbarlou, Seyedeh Akram Shirdel, Vahab Jafarian, Khosrow Khalifeh Molecular mechanisms governing the evolutionary conservation of Glycine in the 6th position of loops ΙΙΙ and ΙV in photoprotein mnemiopsin 2 Journal of Photochemistry & Photobiology, B: Biology Vol. 187 (2018) PP. 18-24 DOI: 10.1016/j.jphotobiol.2018.08.002.
International ISI	7. Khadijeh Moradi, Seyedeh Akram Shirdel, Masoumeh Shamsi, Vahab Jafarian, Khosrow Khalifeh Investigating the structural and functional features of representative recombinants of chondroitinase ABC I Enzyme and Microbial Technology Vol. 107 (2017) PP. 64-71 DOI: 10.1016/j.enzmictec.2017.08.006.
International ISI	6. S. Shahrbanoo Jafari, Vahab Jafarian, Khosrow Khalifeh, Parisa Ghanavatian, and S. Akram Shirdel The effect of charge alteration and flexibility on the function and structural stability of sweet-tasting brazzein RSC Advances Vol. 6 (2016) DOI: 10.1039/c6ra12626j.
International ISI	5. Masoumeh Shamsi, S. Akram Shirdel, Vahab Jafarian, S. Shahrbanoo Jafar, Khosrow Khalifeh, Abolfazl Golestani Optimization of conformational stability and catalytic efficiency in chondroitinase ABC I by protein engineering methods Engineering In Life Science Vol. 16 (2016) PP. 690-696 DOI: 10.1002/elsc.201600034.
International ISI	4. S. Akram Shirdel, Khosrow Khalifeh, Bijan Ranjbar, Abolfazl Golestani,Khosro Khajeh Unfolding of chondroitinase ABC I is dependent on thermodynamicdriving force by kinetically rate constant-amplitude compensation: Astopped flow fluorescence study Enzyme and Microbial Technology Vol. 93 (2016) PP. 200-206 DOI: 10.1016/j.enzmictec.2016.09.001.
International ISI	3. S. Akram Shirdel, Khosrow Khalifeh, Abolfazl Golestani, Bijan Ranjbar, Khosro Khajeh Critical Role of a Loop at C-Terminal Domain on the Conformational Stability and Catalytic Efficiency of Chondroitinase ABC I Molecular Biotechnilogy Vol. 57 (2015) PP. 727-734 DOI: 10.1007/s12033-015-9864-3.
International ISC	2. سیده اکرم شیردل ، مهسا عالمی ، خسرو خلیفه مباحث نوین در زیست‌شناسی: پروتئومیکس و نانوزیست‌فناوری New Topics In Biology: Proteomics and Nanobiotechnology مجله زیست‌فناوری مدرس دوره 4 شماره 2 (1392) صفحات 1-14. [Abstract ]
International ISI	1. S. Akram shirdel, Khosro Khajeh, S. Mohsen Asghari and Hamid-reza Karbalaei-Heydari Enhancement of thermostability and resistance against autolysis in a zinc metalloprotease Engineering In Life Science Vol. 14 Issue 2 (2013) PP. 229-234 DOI: 10.1002/elsc.201200218.